PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593247.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 255aa    MW: 27728.1 Da    PI: 7.663
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.29.3e-322103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++++q+
  XP_013593247.1   2 SCNGCRVLRKGCSENCILRPCIqwietADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNVCQA 96 
                     6*********************9998666789*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_013593247.1  97 AVETVLR 103
                     *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.5621107IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNVCQAAVET VLRGGSLRPI PELLAHGGGF  120
AGFPTATSEE ASEICTEMLN LQQNDGSDDR NMYHHSRFSS SRTRSRLDSS PTKRKRVACS  180
EQQPSSELDL SLIPNFPIKT TPSSTRQRSR TPSMNSEESV TTTTTPTSFW DNTATGGDMY  240
GNGGGETSKL LNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593247.10.0PREDICTED: LOB domain-containing protein 37-like
RefseqXP_013686189.10.0PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN111e-144LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A0D3D8460.0A0A0D3D846_BRAOL; Uncharacterized protein
STRINGBra012164.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-134LOB domain-containing protein 37